MOTIF: Searching Protein and Nucleic Acid Sequence Motifs

MOTIF Search

Search Motif Library	Search Sequence Database	Generate Profile	KEGG2

Or give the file name containing your sequence:
(plain sequence or in Fasta format )

For Protein :

Select motif libraries for protein sequences: ( Help )

Databases

Cut-off score
(Click each database
to get help for cut-off score)

PROSITE Pattern

Skip entries with SKIP-FLAG

	PROSITE Profile
	BLOCKS
	ProDom
	PRINTS
	Pfam	* E-value
	User-defined Profile Library (may contain multiple profiles)

Profile file name:
PROSITE format
HMMER format

For DNA :

Motif library	TRANSFAC (Help)
Classification	All Vertebrates (incl. Virus) Insects Plants Fungi Nematodes Bacteria
Cut off score
Gap penalty

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