Samples of the format of multiple sequence data
;PTPK_HUMAN, 132 bases, 82D340FD checksum.
PTPK_HUMAN
QLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNR
AKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYID......GYQRPSHY
IATQGPVHETVYDFWRMIWQEQSACIVMVTNL1
;PTPK_MOUSE, 132 bases, 656D494A checksum.
PTPK_MOUSE
QLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNR
AKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYIDIWLYRDGYQRPSHY
IATQGPVHETVYDFWRMVWQEQSACIVMVTNL1
LOCUS PTPK_HUMAN 132 bp
DEFINITION PTPK_HUMAN, 132 bases, 82D340FD checksum.
ORIGIN
1 QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR
51 AKNRYGNIIA YDHSRVILQP VEDDPSSDYI NANYID.... ..GYQRPSHY
101 IATQGPVHET VYDFWRMIWQ EQSACIVMVT NL
//
LOCUS PTPK_MOUSE 132 bp
DEFINITION PTPK_MOUSE, 132 bases, 656D494A checksum.
ORIGIN
1 QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR
51 AKNRYGNIIA YDHSRVILQP VEDDPSSDYI NANYIDIWLY RDGYQRPSHY
101 IATQGPVHET VYDFWRMVWQ EQSACIVMVT NL
//
>P1;PTPK_HUMAN
PTPK_HUMAN, 132 bases, 82D340FD checksum.
QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR
AKNRYGNIIA YDHSRVILQP VEDDPSSDYI NANYID.... ..GYQRPSHY
IATQGPVHET VYDFWRMIWQ EQSACIVMVT NL*
>P1;PTPK_MOUSE
PTPK_MOUSE, 132 bases, 656D494A checksum.
QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR
AKNRYGNIIA YDHSRVILQP VEDDPSSDYI NANYIDIWLY RDGYQRPSHY
IATQGPVHET VYDFWRMVWQ EQSACIVMVT NL*
ID PTPK_HUMAN
DE PTPK_HUMAN, 132 bases, 82D340FD checksum.
SQ 132 BP
QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR AKNRYGNIIA
YDHSRVILQP VEDDPSSDYI NANYID.... ..GYQRPSHY IATQGPVHET VYDFWRMIWQ
EQSACIVMVT NL
//
ID PTPK_MOUSE
DE PTPK_MOUSE, 132 bases, 656D494A checksum.
SQ 132 BP
QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR AKNRYGNIIA
YDHSRVILQP VEDDPSSDYI NANYIDIWLY RDGYQRPSHY IATQGPVHET VYDFWRMVWQ
EQSACIVMVT NL
//
>PTPK_HUMAN, 132 bases, 82D340FD checksum.
QLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNR
AKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYID......GYQRPSHY
IATQGPVHETVYDFWRMIWQEQSACIVMVTNL
>PTPK_MOUSE, 132 bases, 656D494A checksum.
QLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNR
AKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYIDIWLYRDGYQRPSHY
IATQGPVHETVYDFWRMVWQEQSACIVMVTNL
2 132 YF
PTPK_HUMAN QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR
AKNRYGNIIA YDHSRVILQP VEDDPSSDYI NANYID.... ..GYQRPSHY
IATQGPVHET VYDFWRMIWQ EQSACIVMVT NL
PTPK_MOUSE QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR
AKNRYGNIIA YDHSRVILQP VEDDPSSDYI NANYIDIWLY RDGYQRPSHY
IATQGPVHET VYDFWRMVWQ EQSACIVMVT NL
2 132
PTPK_HUMAN QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR
PTPK_MOUSE QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR
AKNRYGNIIA YDHSRVILQP VEDDPSSDYI NANYID.... ..GYQRPSHY
AKNRYGNIIA YDHSRVILQP VEDDPSSDYI NANYIDIWLY RDGYQRPSHY
IATQGPVHET VYDFWRMIWQ EQSACIVMVT NL
IATQGPVHET VYDFWRMVWQ EQSACIVMVT NL
MSF: 132 Type: P Check: 9632 ..
Name: PTPK_HUMAN Len: 132 Check: 1563 Weight: 1.00
Name: PTPK_MOUSE Len: 132 Check: 8069 Weight: 1.00
//
PTPK_HUMAN QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR
PTPK_MOUSE QLHPAIRVAD LLQHINLMKT SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR
PTPK_HUMAN AKNRYGNIIA YDHSRVILQP VEDDPSSDYI NANYID.... ..GYQRPSHY
PTPK_MOUSE AKNRYGNIIA YDHSRVILQP VEDDPSSDYI NANYIDIWLY RDGYQRPSHY
PTPK_HUMAN IATQGPVHET VYDFWRMIWQ EQSACIVMVT NL
PTPK_MOUSE IATQGPVHET VYDFWRMVWQ EQSACIVMVT NL
#NEXUS
[sample -- data title]
[Name: PTPK_HUMAN Len: 132 Check: 82D340FD]
[Name: PTPK_MOUSE Len: 132 Check: 656D494A]
begin data;
dimensions ntax=2 nchar=132;
format datatype=protein interleave missing=-;
matrix
PTPK_HUMA QLHPAIRVADLLQHINLMKT SDSYGFKEEYESFFEGQSAS WDVAKKDQNRAKNRYGNIIA YDHSRVILQPVEDDPSSDYI NANYID......GYQRPSHY
PTPK_MOUS QLHPAIRVADLLQHINLMKT SDSYGFKEEYESFFEGQSAS WDVAKKDQNRAKNRYGNIIA YDHSRVILQPVEDDPSSDYI NANYIDIWLYRDGYQRPSHY
PTPK_HUMA IATQGPVHETVYDFWRMIWQ EQSACIVMVTNL
PTPK_MOUS IATQGPVHETVYDFWRMVWQ EQSACIVMVTNL
;
end;
\\\
ENTRY PTPK_HUMAN
TITLE PTPK_HUMAN, 132 bases, 82D340FD checksum.
SEQUENCE
5 10 15 20 25 30
1 Q L H P A I R V A D L L Q H I N L M K T S D S Y G F K E E Y
31 E S F F E G Q S A S W D V A K K D Q N R A K N R Y G N I I A
61 Y D H S R V I L Q P V E D D P S S D Y I N A N Y I D . . . .
91 . . G Y Q R P S H Y I A T Q G P V H E T V Y D F W R M I W Q
121 E Q S A C I V M V T N L
///
ENTRY PTPK_MOUSE
TITLE PTPK_MOUSE, 132 bases, 656D494A checksum.
SEQUENCE
5 10 15 20 25 30
1 Q L H P A I R V A D L L Q H I N L M K T S D S Y G F K E E Y
31 E S F F E G Q S A S W D V A K K D Q N R A K N R Y G N I I A
61 Y D H S R V I L Q P V E D D P S S D Y I N A N Y I D I W L Y
91 R D G Y Q R P S H Y I A T Q G P V H E T V Y D F W R M V W Q
121 E Q S A C I V M V T N L
///
Bioseq-set ::= {
seq-set {
seq {
id { local id 1 },
descr { title "PTPK_HUMAN" },
inst {
repr raw, mol aa, length 132, topology linear,
seq-data
iupacaa "QLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNRAKNRYGNIIAY
DHSRVILQPVEDDPSSDYINANYID......GYQRPSHYIATQGPVHETVYDFWRMIWQEQSACIVMVTNL"
} } ,
seq {
id { local id 2 },
descr { title "PTPK_MOUSE" },
inst {
repr raw, mol aa, length 132, topology linear,
seq-data
iupacaa "QLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNRAKNRYGNIIAY
DHSRVILQPVEDDPSSDYINANYIDIWLYRDGYQRPSHYIATQGPVHETVYDFWRMVWQEQSACIVMVTNL"
} } ,
} }
PTPK_HUMAN QLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNRAKNRYGNIIA
PTPK_MOUSE QLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNRAKNRYGNIIA
PTPK_HUMAN YDHSRVILQPVEDDPSSDYINANYID------GYQRPSHYIATQGPVHETVYDFWRMIWQ
PTPK_MOUSE YDHSRVILQPVEDDPSSDYINANYIDIWLYRDGYQRPSHYIATQGPVHETVYDFWRMVWQ
PTPK_HUMAN EQSACIVMVTNL
PTPK_MOUSE EQSACIVMVTNL
# Sample SELEX
PTPK_HUMAN QLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNRAKNRYGNIIA
PTPK_MOUSE QLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQNRAKNRYGNIIA
PTPK_HUMAN YDHSRVILQPVEDDPSSDYINANYID......GYQRPSHYIATQGPVHETVYDFWRMIWQ
PTPK_MOUSE YDHSRVILQPVEDDPSSDYINANYIDIWLYRDGYQRPSHYIATQGPVHETVYDFWRMVWQ
PTPK_HUMAN EQSACIVMVTNL
PTPK_MOUSE EQSACIVMVTNL
# STOCKHOLM 1.0
#=GF SQ 11
rno_305843 MEMSLRPLLSVFVLGLVSTPSTLAQDDPRYTKFLTQHYDAKPK--GRDARYCESMMRRRGLTS----PCK
#=GS rno_305843 AC rno_305843
#=GS rno_305843 DE rno_305843
mmu_11727 MAISPGPLFLIFVLGLVVIPPTLAQDDSRYTKFLTQHHDAKPK--GRDDRYCERMMKRRSLTS----PCK
#=GS mmu_11727 AC mmu_11727
#=GS mmu_11727 DE mmu_11727
ecb_100034041 MAMSLCPLLLVFVLGLGLTPPSLAQDDSRYRQFLTKHYDANPR--GRNDRYCESMMVRRHLTT----PCK
#=GS ecb_100034041 AC ecb_100034041
#=GS ecb_100034041 DE ecb_100034041
ssc_733639 MVILLGPLLLVFMLGLGLAPLSLAKDEDRYTHFLTQHYDAKPK--GRDGRYCESIMKQRGLTR----PCK
#=GS ssc_733639 AC ssc_733639
#=GS ssc_733639 DE ssc_733639
bta_783225 MVMVLSPLFLVFMLGLGLTPLTLAEDDRRYRHFLIQHYDRSPK--GRDNKYCETMMEKRHLTK----PCK
#=GS bta_783225 AC bta_783225
#=GS bta_783225 DE bta_783225
bta_783907 MVMVLSPLFLVFMLDLGLTPQTLAQN-DAYRGFLRKHYDPSPT--GHDDRYCNTMMERRNMTR----PCK
#=GS bta_783907 AC bta_783907
#=GS bta_783907 DE bta_783907
dre_100003397 MEILQSAVIFLLVFSFSFT-VKVPDNESPYEKFLRQHVDP-----DMSVQKCNSEISKRKITAKAGNDCK
#=GS dre_100003397 AC dre_100003397
#=GS dre_100003397 DE dre_100003397
gga_423668 --MAMSSLWWTAILLLALT-VSMCYGVPTYQDFLYKHMDFPKTSFPSNAAYCNVMMVRRGMTAHG--RCK
#=GS gga_423668 AC gga_423668
#=GS gga_423668 DE gga_423668
dre_100101462 -----MKTRQSFIILLLVICASLAVNSQSYNDFKRKHLAPAGMK---EDDCTTLIVTERKIKEKN--QCK
#=GS dre_100101462 AC dre_100101462
#=GS dre_100101462 DE dre_100101462
tr_Q6EUW9 ----MFPKFSFLLIFAVVLSLTHKSLCQDWETFQKKHLTDTVD-------VNCDVEMQKALFN-----CK
#=GS tr_Q6EUW9 AC tr_Q6EUW9
#=GS tr_Q6EUW9 DE tr_Q6EUW9
xla_398124 MLDIMVAVLSSLLTICIILSFSLPSDTQNINAFMEKHIVKEGA-----ETNCNQTIKDRNIRFKN--NCK
#=GS xla_398124 AC xla_398124
#=GS xla_398124 DE xla_398124
//
# STOCKHOLM 1.0
HBB_HUMAN ........VHLTPEEKSAVTALWGKV....NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVL
HBA_HUMAN .........VLSPADKTNVKAAWGKVGA..HAGEYGAEALERMFLSFPTTKTYFPHF.DLS.....HGSAQVKGHGKKVA
MYG_PHYCA .........VLSEGEWQLVLHVWAKVEA..DVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVL
GLB5_PETMA PIVDTGSVAPLSAAEKTKIRSAWAPVYS..TYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERII
HBB_HUMAN GAFSDGLAHL...D..NLKGTFATLSELHCDKL..HVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANAL
HBA_HUMAN DALTNAVAHV...D..DMPNALSALSDLHAHKL..RVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVL
MYG_PHYCA TALGAILKK....K.GHHEAELKPLAQSHATKH..KIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDI
GLB5_PETMA NAVNDAVASM..DDTEKMSMKLRDLSGKHAKSF..QVDPQYFKVLAAVIADTVAAG.........DAGFEKLMSMICILL
HBB_HUMAN AHKYH......
HBA_HUMAN TSKYR......
MYG_PHYCA AAKYKELGYQG
GLB5_PETMA RSAY.......
//